[ Identification | Description | Input parameters | Output parameters | Links ]

The SAXSPDB Component

A sample describing a thin solution of proteins. This components must be compiled with the -lgsl and -lgslcblas flags (and possibly linked to the appropriate libraries).

Identification

Description

This components expands the formfactor amplitude of the protein on spherical
harmonics and computes the scattering profile using these. The expansion is
done on amino-acid level and does not take hydration layer into account.
The component must have a valid .pdb-file as an argument.

WARNING: This is a contributed Component.

Input parameters

Parameters in boldface are required; the others are optional.
Name Unit Description Default
RhoSolvent AA Scattering length density of the buffer. 9.4e-14
Concentration mM Concentration of sample. 0.01
AbsorptionCrosssection 1/m Absorption cross section of the sample. 0.0
xwidth m Dimension of component in the x-direction.  
yheight m Dimension of component in the y-direction.  
zdepth m Dimension of component in the z-direction.  
SampleToDetectorDistance m Distance from sample to detector (for focusing the scattered x-rays).  
DetectorRadius m Radius of the detector (for focusing the scattered x-rays).  
PDBFilepath "PDBfile.pdb"

Output parameters

Name Unit Description Default
Absorption  
NumberDensity  
OrderOfHarmics  
Matrix  
NumberOfResidues  
Protein  

Links


[ Identification | Description | Input parameters | Output parameters | Links ]

Generated automatically by McDoc, Peter Willendrup <peter.willendrup@risoe.dk> / Tue Nov 26 12:17:24 2019