McXtrace logo

McXtrace - An X-ray ray-trace simulation package

Synchrotron SOLEIL DTU Physics

McXtrace

About McXtrace
 Publications
 Project Partners
 Project People
 Goal

Download
 Components

Documentation
 Manual
 Commands
 Wiki (GitHub)
 Tutorial

Mailing list

Links

Search

Code-repository (GitHub)

Report bugs (GitHub)


McXtrace: SAXSNanodiscsWithTagsFast

[ Identification | Description | Input parameters | Output parameters | Links ]

The SAXSNanodiscsWithTagsFast Component

A sample of monodisperse phospholipid bilayer nanodiscs in solution (water) - with histidine tag still on the belt proteins.

Identification

  • Site:
  • Author: Martin Cramer Pedersen (mcpe@nbi.dk)
  • Origin: KU-Science
  • Date: May 2, 2012

Description

A component very similar to EmptyNanodiscsWithTags.comp - however, the
scattering profile is only computed once, and linear interpolation is the used
to simulate the instrument.

Input parameters

Parameters in boldface are required; the others are optional.
NameUnitDescriptionDefault
NumberOfQBinsNumber of points generated in inital200
AxisRatioAxis ratio of the bilayer patch.1.4
NumberOfLipidsNumber of lipids per nanodisc.130.0
AreaPerLipidHeadgroupAA^2Area per lipid headgroup - default is65.0
HeightOfMSPAAHeight of the belt protein - default is24.0
RadiusOfGyrationForHisTagAARadius of gyration for the his-tag.12.7
VolumeOfOneMSPAA^3Volume of one belt protein - default is26296.5
VolumeOfHeadgroupAA^3Volume of one lipid headgroup - default319.0
VolumeOfCH2TailAA^3Volume of the CH2-chains of one lipid -818.8
VolumeOfCH3TailAA^3Volume of the CH3-tails of one lipid -108.6
VolumeOfOneHisTagAA^3Volume of one his-tag.2987.3
ScatteringLengthOfOneMSPcmScattering length of one belt protein -3.34E-9
ScatteringLengthOfHeadgroupcmScattering length of one lipid headgroup4.62E-11
ScatteringLengthOfCH2TailcmScattering length of the CH2-chains of6.71E-11
ScatteringLengthOfCH3TailcmScattering length of the CH3-tails of5.08E-12
ScatteringLengthOfOneHisTagcmScattering length of one his-tag.3.89E-10
RoughnessFactor used to smear the interfaces3.5
ConcentrationmMConcentration of sample.0.01
AbsorptionCrosssection1/mAbsorption cross section of the sample.0.0
xwidthmDimension of component in the x-direction.
yheightmDimension of component in the y-direction.
zdepthmDimension of component in the z-direction.
SampleToDetectorDistancemDistance from sample to detector (for
DetectorRadiusmRadius of the detector (for focusing the
qMinAA^-1Lowest q-value, for which a point is gene-0.001
qMaxAA^-1Highest q-value, for which a point is gene-1.0

Output parameters

Parameters in boldface are required; the others are optional.
NameUnitDescriptionDefault

Links


[ Identification | Description | Input parameters | Output parameters | Links ]

Generated on 2022-02-07 21:31:39


Last Modified: Wednesday, 11-May-2022 22:46:11 CEST
Search website mailinglist archive GitHub repos